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TENT5C-DT TENT5C divergent transcript [ Homo sapiens (human) ]

Gene ID: 100996263, updated on 10-Oct-2023

Summary

Official Symbol
TENT5C-DTprovided by HGNC
Official Full Name
TENT5C divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55656
See related
Ensembl:ENSG00000236866 AllianceGenome:HGNC:55656
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.4) See more
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Genomic context

Location:
1p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (117596832..117605770, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (117606047..117614985, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (118139454..118148392, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1239 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:117918162-117918686 Neighboring gene mannosidase alpha class 1A member 2 Neighboring gene MPRA-validated peak388 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1240 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1241 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:118105543-118105787 Neighboring gene VPS25 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1582 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:118147484-118147984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:118147985-118148485 Neighboring gene terminal nucleotidyltransferase 5C Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:118172930-118173480 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:118173481-118174031 Neighboring gene VDAC2 pseudogene 3

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121626.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BU568889, BX088863
    Related
    ENST00000440801.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    117596832..117605770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    117606047..117614985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)