U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SDC3 syndecan 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100995829, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
SDC3
Gene description
syndecan 3
See related
Ensembl:ENSPPAG00000032002
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SDC3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (195930956..195970722)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (195048132..195087879)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 1 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene uncharacterized LOC117980216 Neighboring gene lysosomal protein transmembrane 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
syndecan-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    195930956..195970722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034959750.4 → XP_034815641.3  syndecan-3 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AK95

  2. XM_008953449.4 → XP_008951697.1  syndecan-3 isoform X3

    UniProtKB/TrEMBL
    A0A2R9AK95
    Related
    ENSPPAP00000017786.1
    Conserved Domains (1) summary
    pfam01034
    Location:357 → 398
    Syndecan; Syndecan domain

  3. XM_034959753.3 → XP_034815644.1  syndecan-3 isoform X2

    UniProtKB/TrEMBL
    A0A2R9AK95
    Conserved Domains (2) summary
    PHA03247
    Location:96 → 330
    PHA03247; large tegument protein UL36; Provisional
    pfam01034
    Location:350 → 412
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.