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XYLB xylulokinase [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100994568, updated on 11-Apr-2024

Summary

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Gene symbol
XYLB
Gene description
xylulokinase
See related
Ensembl:ENSPPAG00000024504
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See XYLB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 2 NC_085926.1 (38300532..38381690)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 3 NC_073252.1 (38305246..38386454)

Chromosome 2 - NC_085926.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134729892 Neighboring gene oxidative stress responsive kinase 1 Neighboring gene solute carrier family 22 member 13 Neighboring gene U6 spliceosomal RNA Neighboring gene activin A receptor type 2B Neighboring gene exo/endonuclease G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylulokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylulose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylulose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_085926.1 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    38300532..38381690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024928208.5 → XP_024783976.1  xylulose kinase isoform X5

    UniProtKB/TrEMBL
    A0A2R8ZMI9
    Related
    ENSPPAP00000006163.1
    Conserved Domains (1) summary
    cl17037
    Location:9 → 62
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

  2. XM_014344181.4 → XP_014199667.2  xylulose kinase isoform X1

    Conserved Domains (1) summary
    cd07776
    Location:9 → 479
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  3. XM_008951551.4 → XP_008949799.1  xylulose kinase isoform X4

    Conserved Domains (2) summary
    PLN02669
    Location:11 → 434
    PLN02669; xylulokinase
    cd07776
    Location:9 → 434
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  4. XM_008951550.4 → XP_008949798.1  xylulose kinase isoform X3

    Conserved Domains (2) summary
    PLN02669
    Location:11 → 434
    PLN02669; xylulokinase
    cd07776
    Location:9 → 434
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  5. XM_003826093.5 → XP_003826141.1  xylulose kinase isoform X2

    UniProtKB/TrEMBL
    A0A2R8ZTH1
    Related
    ENSPPAP00000006162.1
    Conserved Domains (2) summary
    PLN02669
    Location:11 → 535
    PLN02669; xylulokinase
    cd07776
    Location:9 → 479
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

RNA

  1. XR_001337927.4 RNA Sequence

  2. XR_608387.4 RNA Sequence

Nucleotide Protein
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