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GPNMB glycoprotein nmb [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100993287, updated on 8-Mar-2024

Summary

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Gene symbol
GPNMB
Gene description
glycoprotein nmb
See related
Ensembl:ENSPPAG00000031564
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See GPNMB in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 6 NC_073255.2 (28079304..28141376)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 7 NC_073256.1 (76404030..76466104)

Chromosome 6 - NC_073255.2Genomic Context describing neighboring genes Neighboring gene GTP:AMP phosphotransferase AK3, mitochondrial-like Neighboring gene kelch like family member 7 Neighboring gene nucleoporin 42 Neighboring gene mitochondrial assembly of ribosomal large subunit 1 Neighboring gene insulin like growth factor 2 mRNA binding protein 3 Neighboring gene small nucleolar RNA SNORD65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073255.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    28079304..28141376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055115771.2 → XP_054971746.1  transmembrane glycoprotein NMB isoform X4

  2. XM_055115767.2 → XP_054971742.1  transmembrane glycoprotein NMB isoform X3

  3. XM_055115770.2 → XP_054971745.1  transmembrane glycoprotein NMB isoform X4

  4. XM_055115765.2 → XP_054971740.1  transmembrane glycoprotein NMB isoform X3

  5. XM_055115769.2 → XP_054971744.1  transmembrane glycoprotein NMB isoform X4

  6. XM_063605645.1 → XP_063461715.1  transmembrane glycoprotein NMB isoform X7

  7. XM_055115764.2 → XP_054971739.1  transmembrane glycoprotein NMB isoform X3

  8. XM_003807941.6 → XP_003807989.3  transmembrane glycoprotein NMB isoform X2

  9. XM_063605643.1 → XP_063461713.1  transmembrane glycoprotein NMB isoform X5

  10. XM_034963799.3 → XP_034819690.2  transmembrane glycoprotein NMB isoform X1

  11. XM_063605644.1 → XP_063461714.1  transmembrane glycoprotein NMB isoform X6

  12. XM_063605642.1 → XP_063461712.1  transmembrane glycoprotein NMB isoform X4

  13. XM_063605641.1 → XP_063461711.1  transmembrane glycoprotein NMB isoform X4

  14. XM_063605640.1 → XP_063461710.1  transmembrane glycoprotein NMB isoform X3

Nucleotide Protein
Heading Accession and Version

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