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CNTN1 contactin 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100991427, updated on 10-Oct-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSPPAG00000035124
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 10 NC_073259.2 (53073079..53457589, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 12 NC_073261.1 (53069840..53454351, complement)

Chromosome 10 - NC_073259.2Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat protein 5-like Neighboring gene PDZ domain containing ring finger 4 Neighboring gene methionine aminopeptidase 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene mucin 19, oligomeric Neighboring gene leucine rich repeat kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073259.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    53073079..53457589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003825727.4 → XP_003825775.3  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  2. XM_055095741.2 → XP_054951716.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  3. XM_055095740.2 → XP_054951715.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  4. XM_055095739.2 → XP_054951714.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  5. XM_063593095.1 → XP_063449165.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  6. XM_008951052.4 → XP_008949300.3  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  7. XM_055095742.2 → XP_054951717.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B741

  8. XM_008951055.3 → XP_008949303.3  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2R9B3B9

  9. XM_055095743.2 → XP_054951718.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2R9B3B9

  10. XM_057299469.2 → XP_057155452.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2R9B3B9
Nucleotide Protein
Heading Accession and Version

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