U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATRNL1 attractin like 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100991329, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ATRNL1
Gene description
attractin like 1
See related
Ensembl:ENSPPAG00000033309
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATRNL1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 8 NC_073257.2 (126967776..127824798)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 10 NC_073259.1 (126973114..127827727)

Chromosome 8 - NC_073257.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129393147 Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene GDNF family receptor alpha 1 Neighboring gene coiled-coil domain containing 172

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073257.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    126967776..127824798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034931565.3 → XP_034787456.1  attractin-like protein 1 isoform X3

    Conserved Domains (9) summary
    cd03597
    Location:602 → 728
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:308 → 454
    PLN02153; epithiospecifier protein
    PLN02193
    Location:154 → 241
    PLN02193; nitrile-specifier protein
    cd00055
    Location:867 → 912
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:375 → 428
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:743 → 792
    PSI; Plexin repeat
    pfam13854
    Location:206 → 246
    Kelch_5; Kelch motif
    cl00049
    Location:3 → 62
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl19567
    Location:89 → 134
    DSL; Delta serrate ligand

  2. XM_034931566.4 → XP_034787457.1  attractin-like protein 1 isoform X4

    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  3. XM_034931567.4 → XP_034787458.1  attractin-like protein 1 isoform X5

    Conserved Domains (9) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:454 → 600
    PLN02153; epithiospecifier protein
    PLN02193
    Location:300 → 387
    PLN02193; nitrile-specifier protein
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  4. XM_008950947.5 → XP_008949195.1  attractin-like protein 1 isoform X2

    Conserved Domains (7) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13418
    Location:468 → 514
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

  5. XM_003825615.5 → XP_003825663.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9AYS8
    Related
    ENSPPAP00000020214.1
    Conserved Domains (8) summary
    cd03597
    Location:748 → 874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:93 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1013 → 1058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:521 → 574
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:889 → 938
    PSI; Plexin repeat
    pfam13418
    Location:468 → 514
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:352 → 392
    Kelch_5; Kelch motif
    cl19567
    Location:235 → 280
    DSL; Delta serrate ligand

RNA

  1. XR_008619833.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.