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EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100991162, updated on 8-Mar-2024

Summary

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Gene symbol
EDEM3
Gene description
ER degradation enhancing alpha-mannosidase like protein 3
See related
Ensembl:ENSPPAG00000037330
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See EDEM3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (64956321..65029915)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (64642899..64713341)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 2 Neighboring gene niban apoptosis regulator 1 Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC129397461 Neighboring gene chromosome 1 C1orf21 homolog Neighboring gene tRNA (uracil-5-)-methyltransferase homolog B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    64956321..65029915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008968564.4 → XP_008966812.4  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

  2. XM_034942361.3 → XP_034798252.3  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3

  3. XM_008968566.4 → XP_008966814.4  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X4

  4. XM_034942372.3 → XP_034798263.3  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X6

  5. XM_034942381.3 → XP_034798272.3  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X8

  6. XM_003815606.6 → XP_003815654.4  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X2

  7. XM_003815605.5 → XP_003815653.4  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X5

  8. XM_034942374.3 → XP_034798265.3  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X7

  9. XM_055110598.2 → XP_054966573.2  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X9

Nucleotide Protein
Heading Accession and Version

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