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CPSF1 cleavage and polyadenylation specific factor 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100990282, updated on 10-Oct-2024

Summary

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Gene symbol
CPSF1
Gene description
cleavage and polyadenylation specific factor 1
See related
Ensembl:ENSPPAG00000019280
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CPSF1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 7 NC_073256.2 (161882889..161900722, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 8 NC_073257.1 (137411908..137429795, complement)

Chromosome 7 - NC_073256.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 249 Neighboring gene F-box and leucine rich repeat protein 6 Neighboring gene solute carrier family 52 member 2 Neighboring gene aarF domain containing kinase 5 Neighboring gene solute carrier family 39 member 4 Neighboring gene VPS28 subunit of ESCRT-I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073256.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    161882889..161900722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034966915.3 → XP_034822806.2  cleavage and polyadenylation specificity factor subunit 1 isoform X1

  2. XM_063607006.1 → XP_063463076.1  cleavage and polyadenylation specificity factor subunit 1 isoform X1

  3. XM_055116095.2 → XP_054972070.1  cleavage and polyadenylation specificity factor subunit 1 isoform X2

  4. XM_024929747.4 → XP_024785515.1  cleavage and polyadenylation specificity factor subunit 1 isoform X4

    UniProtKB/TrEMBL
    A0A2R8ZIG4
    Related
    ENSPPAP00000004752.1
    Conserved Domains (1) summary
    cl26526
    Location:1 → 1385
    CPSF_A; CPSF A subunit region

  5. XM_003819416.5 → XP_003819464.1  cleavage and polyadenylation specificity factor subunit 1 isoform X3

    See identical proteins and their annotated locations for XP_003819464.1

    UniProtKB/TrEMBL
    A0A2R8ZIE5, A0A2R8ZIE7
    Related
    ENSPPAP00000004732.1
    Conserved Domains (1) summary
    COG5161
    Location:1 → 1436
    SFT1; Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]

  6. XM_063607007.1 → XP_063463077.1  cleavage and polyadenylation specificity factor subunit 1 isoform X3

    UniProtKB/TrEMBL
    A0A2R8ZIE5
Nucleotide Protein
Heading Accession and Version

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