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B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100989611, updated on 8-Mar-2024

Summary

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Gene symbol
B4GALNT3
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 3
See related
Ensembl:ENSPPAG00000029227
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See B4GALNT3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 10 NC_073259.2 (5947510..6058661)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 12 NC_073261.1 (5944272..6055423)

Chromosome 10 - NC_073259.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130540643 Neighboring gene solute carrier family 6 member 13 Neighboring gene lysine demethylase 5A Neighboring gene coiled-coil domain containing 77 Neighboring gene U7 small nuclear RNA Neighboring gene ninjurin 2 Neighboring gene uncharacterized LOC134728464

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073259.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    5947510..6058661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034935066.3 → XP_034790957.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A2R9A438
    Conserved Domains (2) summary
    smart00758
    Location:140 → 277
    PA14; domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins
    cl11394
    Location:788 → 984
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_034935065.3 → XP_034790956.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A2R9A438
    Conserved Domains (2) summary
    smart00758
    Location:140 → 277
    PA14; domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins
    cl11394
    Location:789 → 985
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RNA

  1. XR_004665550.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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