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ACER1 alkaline ceramidase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100988247, updated on 18-Sep-2024

Summary

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Gene symbol
ACER1
Gene description
alkaline ceramidase 1
See related
Ensembl:ENSPPAG00000041682
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ACER1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 20 NC_073269.2 (10706922..10738430, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 19 NC_073268.1 (9932811..9964360, complement)

Chromosome 20 - NC_073269.2Genomic Context describing neighboring genes Neighboring gene regulatory factor X2 Neighboring gene acyl-CoA synthetase bubblegum family member 2 Neighboring gene uncharacterized LOC103786209 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene uncharacterized LOC134729592 Neighboring gene caseinolytic mitochondrial matrix peptidase proteolytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073269.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    10706922..10738430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003819330.5 → XP_003819378.1  alkaline ceramidase 1

    See identical proteins and their annotated locations for XP_003819378.1

    UniProtKB/TrEMBL
    A0A2R9C7X1
    Related
    ENSPPAP00000037904.1
    Conserved Domains (1) summary
    pfam05875
    Location:3 → 250
    Ceramidase; Ceramidase
Nucleotide Protein
Heading Accession and Version

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