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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100986957, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
See related
Ensembl:ENSPPAG00000037658
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SPTLC3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 21 NC_073270.2 (13894378..14053615)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 20 NC_073269.1 (13891210..14052725)

Chromosome 21 - NC_073270.2Genomic Context describing neighboring genes Neighboring gene BTB domain containing 3 Neighboring gene uncharacterized LOC103784790 Neighboring gene proliferation-associated protein 2G4-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene isthmin 1 Neighboring gene taspase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073270.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    13894378..14053615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003810576.6 → XP_003810624.1  serine palmitoyltransferase 3

    See identical proteins and their annotated locations for XP_003810624.1

    UniProtKB/TrEMBL
    A0A2R9BLL9
    Related
    ENSPPAP00000029297.1
    Conserved Domains (1) summary
    cl18945
    Location:57 → 549
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_034947071.3 → XP_034802962.1  serine palmitoyltransferase 3

    UniProtKB/TrEMBL
    A0A2R9BLL9
    Conserved Domains (1) summary
    cl18945
    Location:57 → 549
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
Heading Accession and Version

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