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ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100986873, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH2
Gene description
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase
See related
Ensembl:ENSPPAG00000033974
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ALKBH2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 10 NC_073259.2 (117153973..117160045, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 12 NC_073261.1 (117150371..117156460, complement)

Chromosome 10 - NC_073259.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene SV2 related protein Neighboring gene ubiquitin specific peptidase 30 Neighboring gene uracil DNA glycosylase Neighboring gene acetyl-CoA carboxylase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytosine C-5 DNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA oxidative demethylase ALKBH2
Names
alkB, alkylation repair homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073259.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    117153973..117160045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057299522.2 → XP_057155505.1  DNA oxidative demethylase ALKBH2 isoform X2

    UniProtKB/TrEMBL
    A0A2R9AWA1

  2. XM_063593636.1 → XP_063449706.1  DNA oxidative demethylase ALKBH2 isoform X2

    UniProtKB/TrEMBL
    A0A2R9AWA1

  3. XM_008957943.5 → XP_008956191.1  DNA oxidative demethylase ALKBH2 isoform X1

    See identical proteins and their annotated locations for XP_008956191.1

    UniProtKB/TrEMBL
    A0A2R9AWD5
    Conserved Domains (1) summary
    pfam13532
    Location:72 → 254
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  4. XM_008957944.4 → XP_008956192.1  DNA oxidative demethylase ALKBH2 isoform X2

    See identical proteins and their annotated locations for XP_008956192.1

    UniProtKB/TrEMBL
    A0A2R9AWA1
    Related
    ENSPPAP00000021517.1

  5. XM_003832512.6 → XP_003832560.1  DNA oxidative demethylase ALKBH2 isoform X1

    See identical proteins and their annotated locations for XP_003832560.1

    UniProtKB/TrEMBL
    A0A2R9AWD5
    Conserved Domains (1) summary
    pfam13532
    Location:72 → 254
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  6. XM_008957941.5 → XP_008956189.1  DNA oxidative demethylase ALKBH2 isoform X1

    See identical proteins and their annotated locations for XP_008956189.1

    UniProtKB/TrEMBL
    A0A2R9AWD5
    Conserved Domains (1) summary
    pfam13532
    Location:72 → 254
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  7. XM_003832511.5 → XP_003832559.1  DNA oxidative demethylase ALKBH2 isoform X1

    See identical proteins and their annotated locations for XP_003832559.1

    UniProtKB/TrEMBL
    A0A2R9AWD5
    Related
    ENSPPAP00000021514.1
    Conserved Domains (1) summary
    pfam13532
    Location:72 → 254
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
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