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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100984632, updated on 8-Mar-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
See related
Ensembl:ENSPPAG00000033356
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (198894311..198921240, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (198011239..198038177, complement)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    198894311..198921240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008953402.4 → XP_008951650.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

    UniProtKB/TrEMBL
    A0A2R9ASF8
    Related
    ENSPPAP00000020271.1
    Conserved Domains (1) summary
    cd00842
    Location:23 → 275
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_003828081.6 → XP_003828129.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X1

    UniProtKB/TrEMBL
    A0A2R9AWT9
    Related
    ENSPPAP00000020265.1
    Conserved Domains (2) summary
    cd00842
    Location:23 → 323
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:82 → 281
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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