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HS2ST1 heparan sulfate 2-O-sulfotransferase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100984243, updated on 8-Mar-2024

Summary

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Gene symbol
HS2ST1
Gene description
heparan sulfate 2-O-sulfotransferase 1
See related
Ensembl:ENSPPAG00000039539
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See HS2ST1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (139858992..140058251, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (139015922..139213658, complement)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129398612 Neighboring gene uncharacterized LOC129397803 Neighboring gene SUMO-activating enzyme subunit 2-like Neighboring gene SUMO-activating enzyme subunit 2-like Neighboring gene selenoprotein F Neighboring gene large ribosomal subunit protein uL22-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    139858992..140058251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003805308.5 → XP_003805356.1  heparan sulfate 2-O-sulfotransferase 1 isoform X2

    See identical proteins and their annotated locations for XP_003805356.1

    UniProtKB/TrEMBL
    A0A2R9BUK9
    Related
    ENSPPAP00000033357.1
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 326
    Sulfotransfer_2; Sulfotransferase family

  2. XM_008969691.5 → XP_008967939.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_008967939.1

    Conserved Domains (1) summary
    pfam03567
    Location:71 → 327
    Sulfotransfer_2; Sulfotransferase family

  3. XM_055116498.2 → XP_054972473.1  heparan sulfate 2-O-sulfotransferase 1 isoform X3

  4. XM_034934216.3 → XP_034790107.1  heparan sulfate 2-O-sulfotransferase 1 isoform X3

    Conserved Domains (1) summary
    pfam03567
    Location:13 → 269
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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