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SLC11A1 solute carrier family 11 member 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100983986, updated on 8-Mar-2024

Summary

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Gene symbol
SLC11A1
Gene description
solute carrier family 11 member 1
See related
Ensembl:ENSPPAG00000035104
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SLC11A1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 13 NC_073262.2 (121013434..121028331)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 2B NC_073251.1 (121028394..121041725)

Chromosome 13 - NC_073262.2Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL19-like Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene uncharacterized LOC117979465 Neighboring gene CTD small phosphatase 1 Neighboring gene microRNA mir-26b Neighboring gene villin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal cation:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 1
Names
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073262.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    121013434..121028331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008971935.5 → XP_008970183.1  natural resistance-associated macrophage protein 1 isoform X2

    Conserved Domains (2) summary
    TIGR01197
    Location:56 → 456
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:78 → 463
    Nramp; Natural resistance-associated macrophage protein

  2. XM_003818612.5 → XP_003818660.1  natural resistance-associated macrophage protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2R9B2T1
    Related
    ENSPPAP00000023912.1
    Conserved Domains (2) summary
    TIGR01197
    Location:56 → 456
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:78 → 463
    Nramp; Natural resistance-associated macrophage protein

  3. XM_008971936.5 → XP_008970184.1  natural resistance-associated macrophage protein 1 isoform X3

    Conserved Domains (2) summary
    TIGR01197
    Location:51 → 415
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:51 → 422
    Nramp; Natural resistance-associated macrophage protein

  4. XM_034955118.3 → XP_034811009.1  natural resistance-associated macrophage protein 1 isoform X5

    Conserved Domains (1) summary
    cl00456
    Location:14 → 338
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_034955117.3 → XP_034811008.1  natural resistance-associated macrophage protein 1 isoform X4

    Conserved Domains (1) summary
    TIGR01197
    Location:1 → 389
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

  6. XM_008971938.6 → XP_008970186.1  natural resistance-associated macrophage protein 1 isoform X5

    See identical proteins and their annotated locations for XP_008970186.1

    Conserved Domains (1) summary
    cl00456
    Location:14 → 338
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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