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TMED5 transmembrane p24 trafficking protein 5 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100983472, updated on 10-Oct-2024

Summary

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Gene symbol
TMED5
Gene description
transmembrane p24 trafficking protein 5
See related
Ensembl:ENSPPAG00000027553
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TMED5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (133835694..133864516)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (132990585..133019411)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL39-like Neighboring gene coiled-coil domain containing 18 Neighboring gene large ribosomal subunit protein eL42-like Neighboring gene metal response element binding transcription factor 2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi ribbon formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane emp24 domain-containing protein 5
Names
transmembrane emp24 protein transport domain containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    133835694..133864516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003808431.8 → XP_003808479.1  transmembrane emp24 domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZXX5
    Related
    ENSPPAP00000008632.1
    Conserved Domains (1) summary
    pfam01105
    Location:35 → 222
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

  2. XM_003808432.7 → XP_003808480.1  transmembrane emp24 domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A2R8ZVQ1
    Related
    ENSPPAP00000008636.1
    Conserved Domains (1) summary
    pfam01105
    Location:35 → 162
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

  3. XM_055115989.2 → XP_054971964.1  transmembrane emp24 domain-containing protein 5 isoform X2

Nucleotide Protein
Heading Accession and Version

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