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RIOK1 RIO kinase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100983090, updated on 8-Mar-2024

Summary

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Gene symbol
RIOK1
Gene description
RIO kinase 1
See related
Ensembl:ENSPPAG00000016349
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See RIOK1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 5 NC_073254.2 (22030744..22059382)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 6 NC_073255.1 (18027710..18056344)

Chromosome 5 - NC_073254.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS3-like Neighboring gene probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 Neighboring gene cancer antigen 1 Neighboring gene uncharacterized LOC134730570 Neighboring gene heterogeneous nuclear ribonucleoprotein L-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase RIO1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073254.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    22030744..22059382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034961408.3 → XP_034817299.1  serine/threonine-protein kinase RIO1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZFU1
    Conserved Domains (1) summary
    cd05147
    Location:182 → 371
    RIO1_euk; Catalytic domain of the atypical protein serine kinase, Eukaryotic RIO1 kinase

  2. XM_034961409.3 → XP_034817300.1  serine/threonine-protein kinase RIO1 isoform X2

    Conserved Domains (1) summary
    cd05147
    Location:78 → 267
    RIO1_euk; Catalytic domain of the atypical protein serine kinase, Eukaryotic RIO1 kinase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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