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TMEM199 transmembrane protein 199 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100981625, updated on 8-Mar-2024

Summary

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Gene symbol
TMEM199
Gene description
transmembrane protein 199
See related
Ensembl:ENSPPAG00000010459
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TMEM199 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 19 NC_073268.2 (36096421..36101069, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 17 NC_073266.1 (37976799..37981439, complement)

Chromosome 19 - NC_073268.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 46 member 1 Neighboring gene sterile alpha and TIR motif containing 1 Neighboring gene vitronectin Neighboring gene SEBOX homeobox Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene TNF alpha induced protein 1 Neighboring gene intraflagellar transport 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073268.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    36096421..36101069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003812664.5 → XP_003812712.1  transmembrane protein 199

    See identical proteins and their annotated locations for XP_003812712.1

    UniProtKB/TrEMBL
    A0A2R8ZI11
    Related
    ENSPPAP00000002334.1
    Conserved Domains (1) summary
    pfam11712
    Location:78 → 202
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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