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B3GAT1 beta-1,3-glucuronyltransferase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100980067, updated on 8-Mar-2024

Summary

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Gene symbol
B3GAT1
Gene description
beta-1,3-glucuronyltransferase 1
See related
Ensembl:ENSPPAG00000032110
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See B3GAT1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 9 NC_073258.2 (135072492..135141911, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 11 NC_073260.1 (136171633..136241586, complement)

Chromosome 9 - NC_073258.2Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase family member 8 Neighboring gene galactosidase beta 1 like 3 Neighboring gene galactosidase beta 1 like 2 Neighboring gene uncharacterized LOC117975084 Neighboring gene uncharacterized LOC129393428

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
Names
beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073258.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    135072492..135141911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055095130.2 → XP_054951105.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

  2. XM_008973241.4 → XP_008971489.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X2

    Conserved Domains (1) summary
    pfam03360
    Location:118 → 326
    Glyco_transf_43; Glycosyltransferase family 43

  3. XM_003819836.5 → XP_003819884.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9AKV0
    Related
    ENSPPAP00000017997.1
    Conserved Domains (1) summary
    pfam03360
    Location:105 → 315
    Glyco_transf_43; Glycosyltransferase family 43

RNA

  1. XR_008620306.2 RNA Sequence

Nucleotide Protein
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