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SGPP1 sphingosine-1-phosphate phosphatase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100979353, updated on 8-Mar-2024

Summary

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Gene symbol
SGPP1
Gene description
sphingosine-1-phosphate phosphatase 1
See related
Ensembl:ENSPPAG00000041791
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SGPP1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 15 NC_073264.2 (64795453..64839332, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 14 NC_073263.1 (64011967..64055847, complement)

Chromosome 15 - NC_073264.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene small nucleolar RNA U3 Neighboring gene eukaryotic translation initiation factor 2 subunit 2-like Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene estrogen receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073264.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    64795453..64839332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034937676.2 → XP_034793567.1  sphingosine-1-phosphate phosphatase 1 isoform X3

    Conserved Domains (1) summary
    cd03388
    Location:126 → 245
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...

  2. XM_034937674.1 → XP_034793565.1  sphingosine-1-phosphate phosphatase 1 isoform X2

    Conserved Domains (1) summary
    cd03388
    Location:126 → 275
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...

  3. XM_055097684.1 → XP_054953659.1  sphingosine-1-phosphate phosphatase 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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