U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RFT1 RFT1 homolog [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100979148, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
RFT1
Gene description
RFT1 homolog
See related
Ensembl:ENSPPAG00000035449
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RFT1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 2 NC_085926.1 (53063258..53126908, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 3 NC_073252.1 (53068029..53131679, complement)

Chromosome 2 - NC_085926.1Genomic Context describing neighboring genes Neighboring gene Scm like with four mbt domains 1 Neighboring gene SERPINE1 mRNA-binding protein 1-like Neighboring gene protein kinase C delta Neighboring gene transketolase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein RFT1 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_085926.1 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    53063258..53126908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063602450.1 → XP_063458520.1  protein RFT1 homolog isoform X7

  2. XM_055110058.2 → XP_054966033.1  protein RFT1 homolog isoform X6

  3. XM_003818742.5 → XP_003818790.2  protein RFT1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A2R9B6G2, A0A2R9B8R5
    Related
    ENSPPAP00000024650.1
    Conserved Domains (1) summary
    pfam04506
    Location:11 → 524
    Rft-1; Rft protein

  4. XM_055110056.2 → XP_054966031.1  protein RFT1 homolog isoform X1

  5. XM_034956661.3 → XP_034812552.1  protein RFT1 homolog isoform X5

    UniProtKB/TrEMBL
    A0A2R9B4Z9, A0A2R9B6G2
    Conserved Domains (1) summary
    cl09326
    Location:14 → 485
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  6. XM_008972090.4 → XP_008970338.1  protein RFT1 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2R9B6G2
    Conserved Domains (1) summary
    cl09326
    Location:11 → 490
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  7. XM_008972091.4 → XP_008970339.1  protein RFT1 homolog isoform X8

    Conserved Domains (1) summary
    cl09326
    Location:1 → 378
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  8. XM_055110057.2 → XP_054966032.1  protein RFT1 homolog isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.