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SLC35B3 solute carrier family 35 member B3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100978221, updated on 3-Apr-2024

Summary

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Gene symbol
SLC35B3
Gene description
solute carrier family 35 member B3
See related
Ensembl:ENSPPAG00000039344
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SLC35B3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 5 NC_073254.2 (23057723..23080233, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 6 NC_073255.1 (19050892..19073435, complement)

Chromosome 5 - NC_073254.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129397916 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 5 Neighboring gene eukaryotic translation elongation factor 1 epsilon 1 Neighboring gene orofacial cleft 1 candidate gene 1 protein Neighboring gene large ribosomal subunit protein eL8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
adenosine 3'-phospho 5'-phosphosulfate transporter 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073254.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    23057723..23080233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063605141.1 → XP_063461211.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X6

  2. XM_034961419.3 → XP_034817310.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X5

    Conserved Domains (1) summary
    pfam08449
    Location:48 → 339
    UAA; UAA transporter family

  3. XM_008952878.5 → XP_008951126.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X1

    Conserved Domains (1) summary
    pfam08449
    Location:82 → 373
    UAA; UAA transporter family

  4. XM_003827530.5 → XP_003827578.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X2

    See identical proteins and their annotated locations for XP_003827578.1

    UniProtKB/TrEMBL
    A0A2R9BWX6
    Conserved Domains (1) summary
    pfam08449
    Location:80 → 371
    UAA; UAA transporter family

  5. XM_003827532.5 → XP_003827580.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X2

    See identical proteins and their annotated locations for XP_003827580.1

    UniProtKB/TrEMBL
    A0A2R9BWX6
    Related
    ENSPPAP00000032968.1
    Conserved Domains (1) summary
    pfam08449
    Location:80 → 371
    UAA; UAA transporter family

  6. XM_063605140.1 → XP_063461210.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X4

    UniProtKB/TrEMBL
    A0A2R9BTH3

  7. XM_008952881.4 → XP_008951129.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X5

    Conserved Domains (1) summary
    pfam08449
    Location:48 → 339
    UAA; UAA transporter family

  8. XM_034961414.3 → XP_034817305.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X3

    Conserved Domains (1) summary
    pfam08449
    Location:82 → 342
    UAA; UAA transporter family

  9. XM_008952879.5 → XP_008951127.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X2

    See identical proteins and their annotated locations for XP_008951127.1

    UniProtKB/TrEMBL
    A0A2R9BWX6
    Related
    ENSPPAP00000032965.1
    Conserved Domains (1) summary
    pfam08449
    Location:80 → 371
    UAA; UAA transporter family

  10. XM_063605139.1 → XP_063461209.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BWX6

  11. XM_024929164.4 → XP_024784932.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BWX6
    Conserved Domains (1) summary
    pfam08449
    Location:80 → 371
    UAA; UAA transporter family

  12. XM_003827533.6 → XP_003827581.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X2

    See identical proteins and their annotated locations for XP_003827581.1

    UniProtKB/TrEMBL
    A0A2R9BWX6
    Conserved Domains (1) summary
    pfam08449
    Location:80 → 371
    UAA; UAA transporter family

  13. XM_055113162.2 → XP_054969137.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X5

  14. XM_034961417.3 → XP_034817308.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X7

    Conserved Domains (1) summary
    pfam08449
    Location:24 → 295
    UAA; UAA transporter family

  15. XM_034961418.3 → XP_034817309.1  adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X8

    Conserved Domains (1) summary
    pfam08449
    Location:10 → 281
    UAA; UAA transporter family
Nucleotide Protein
Heading Accession and Version

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