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CPT1B carnitine palmitoyltransferase 1B [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100977928, updated on 6-Jun-2024

Summary

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Gene symbol
CPT1B
Gene description
carnitine palmitoyltransferase 1B
See related
Ensembl:ENSPPAG00000023865
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CPT1B in Genome Data Viewer
Location:
chromosome: 23
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 23 NC_085927.1 (60488826..60499113, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 22 NC_073271.1 (63179408..63189695, complement)

Chromosome 23 - NC_085927.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 7B Neighboring gene synaptonemal complex central element protein 3 Neighboring gene choline kinase beta Neighboring gene mitogen-activated protein kinase 8 interacting protein 2 Neighboring gene arylsulfatase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, muscle isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_085927.1 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    60488826..60499113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055105537.2 → XP_054961512.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  2. XM_055105538.1 → XP_054961513.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  3. XM_008961501.4 → XP_008959749.1  carnitine O-palmitoyltransferase 1, muscle isoform

    See identical proteins and their annotated locations for XP_008959749.1

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01
    Conserved Domains (2) summary
    pfam00755
    Location:173 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  4. XM_057300987.2 → XP_057156970.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  5. XM_055105539.2 → XP_054961514.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  6. XM_063603369.1 → XP_063459439.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  7. XM_063603370.1 → XP_063459440.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  8. XM_063603372.1 → XP_063459442.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

  9. XM_063603371.1 → XP_063459441.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A2R8ZLV8, A0A2R8ZN01

RNA

  1. XR_008622500.2 RNA Sequence

  2. XR_008622499.2 RNA Sequence

  3. XR_008622502.1 RNA Sequence

  4. XR_008622501.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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