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SGCD sarcoglycan delta [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100977535, updated on 3-Apr-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSPPAG00000027674
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 4 NC_073253.2 (150925175..151958431)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 5 NC_073254.1 (149065868..150104107)

Chromosome 4 - NC_073253.2Genomic Context describing neighboring genes Neighboring gene CST complex subunit STN1-like Neighboring gene peptidyl-prolyl cis-trans isomerase G-like Neighboring gene uncharacterized LOC103783375 Neighboring gene U6 spliceosomal RNA Neighboring gene PPP1R2 family member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073253.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    150925175..151958431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008954393.6 → XP_008952641.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZV78
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_008954394.6 → XP_008952642.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_063604282.1 → XP_063460352.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZV78

  4. XM_003828957.5 → XP_003829005.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZV78
    Related
    ENSPPAP00000008870.1
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_063604283.1 → XP_063460353.1  delta-sarcoglycan isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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