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CHST12 carbohydrate sulfotransferase 12 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100977359, updated on 8-Mar-2024

Summary

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Gene symbol
CHST12
Gene description
carbohydrate sulfotransferase 12
See related
Ensembl:ENSPPAG00000008280
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CHST12 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 6 NC_073255.2 (7362530..7393279)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 7 NC_073256.1 (55687252..55721069)

Chromosome 6 - NC_073255.2Genomic Context describing neighboring genes Neighboring gene sorting nexin 8 Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene galectin-related inter-fiber protein Neighboring gene uncharacterized LOC117980865

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073255.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    7362530..7393279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034963532.3 → XP_034819423.2  carbohydrate sulfotransferase 12 isoform X1

  2. XM_003819741.5 → XP_003819789.1  carbohydrate sulfotransferase 12 isoform X2

    See identical proteins and their annotated locations for XP_003819789.1

    UniProtKB/TrEMBL
    A0A2R8ZAC1
    Related
    ENSPPAP00000001792.1
    Conserved Domains (1) summary
    pfam03567
    Location:160 → 405
    Sulfotransfer_2; Sulfotransferase family

  3. XM_003819742.5 → XP_003819790.1  carbohydrate sulfotransferase 12 isoform X2

    See identical proteins and their annotated locations for XP_003819790.1

    UniProtKB/TrEMBL
    A0A2R8ZAC1
    Conserved Domains (1) summary
    pfam03567
    Location:160 → 405
    Sulfotransfer_2; Sulfotransferase family

  4. XM_008973154.4 → XP_008971402.1  carbohydrate sulfotransferase 12 isoform X2

    See identical proteins and their annotated locations for XP_008971402.1

    UniProtKB/TrEMBL
    A0A2R8ZAC1
    Conserved Domains (1) summary
    pfam03567
    Location:160 → 405
    Sulfotransfer_2; Sulfotransferase family

  5. XM_008973155.5 → XP_008971403.1  carbohydrate sulfotransferase 12 isoform X2

    See identical proteins and their annotated locations for XP_008971403.1

    UniProtKB/TrEMBL
    A0A2R8ZAC1
    Conserved Domains (1) summary
    pfam03567
    Location:160 → 405
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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