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EDC3 enhancer of mRNA decapping 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100977308, updated on 8-Mar-2024

Summary

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Gene symbol
EDC3
Gene description
enhancer of mRNA decapping 3
See related
Ensembl:ENSPPAG00000040143
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See EDC3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 16 NC_073265.2 (63862389..63927743, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 15 NC_073264.1 (68025974..68091384, complement)

Chromosome 16 - NC_073265.2Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 3B Neighboring gene CDC like kinase 3 Neighboring gene cytochrome P450 family 1 subfamily A member 1 Neighboring gene cytochrome P450 family 1 subfamily A member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3
Names
enhancer of mRNA decapping 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073265.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    63862389..63927743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003811102.5 → XP_003811150.1  enhancer of mRNA-decapping protein 3

    See identical proteins and their annotated locations for XP_003811150.1

    UniProtKB/TrEMBL
    A0A2R9C828
    Related
    ENSPPAP00000034604.1
    Conserved Domains (4) summary
    cd01737
    Location:2 → 66
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:302 → 455
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:199 → 300
    FDF; FDF domain
    pfam16598
    Location:102 → 197
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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