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TGDS TDP-glucose 4,6-dehydratase [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100976334, updated on 8-Mar-2024

Summary

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Gene symbol
TGDS
Gene description
TDP-glucose 4,6-dehydratase
See related
Ensembl:ENSPPAG00000039020
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TGDS in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 14 NC_073263.2 (96103255..96125454, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 13 NC_073262.1 (94771940..94794266, complement)

Chromosome 14 - NC_073263.2Genomic Context describing neighboring genes Neighboring gene glypican 6 Neighboring gene uncharacterized LOC130540731 Neighboring gene dopachrome tautomerase Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene G protein-coupled receptor 180 Neighboring gene SRY-box transcription factor 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dTDP-glucose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-sugar metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dTDP-D-glucose 4,6-dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073263.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    96103255..96125454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003832023.5 → XP_003832071.2  dTDP-D-glucose 4,6-dehydratase isoform X1

    UniProtKB/TrEMBL
    A0A2R9BUY7
    Conserved Domains (1) summary
    cd05246
    Location:18 → 336
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  2. XM_008957393.5 → XP_008955641.2  dTDP-D-glucose 4,6-dehydratase isoform X2

    UniProtKB/TrEMBL
    A0A2R9BUY7
    Conserved Domains (1) summary
    cd05246
    Location:1 → 304
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  3. XM_008957394.3 → XP_008955642.2  dTDP-D-glucose 4,6-dehydratase isoform X2

    UniProtKB/TrEMBL
    A0A2R9BUY7
    Conserved Domains (1) summary
    cd05246
    Location:1 → 304
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
Nucleotide Protein
Heading Accession and Version

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