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CNTFR ciliary neurotrophic factor receptor [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100974295, updated on 8-Mar-2024

Summary

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Gene symbol
CNTFR
Gene description
ciliary neurotrophic factor receptor
See related
Ensembl:ENSPPAG00000041159
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CNTFR in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 11 NC_073260.2 (90013433..90052344)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 9 NC_073258.1 (90019374..90058284)

Chromosome 11 - NC_073260.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134728582 Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene energy homeostasis associated Neighboring gene family with sequence similarity 219 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ciliary neurotrophic factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ciliary neurotrophic factor receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073260.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    90013433..90052344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034967340.3 → XP_034823231.1  ciliary neurotrophic factor receptor subunit alpha isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  2. XM_055117282.1 → XP_054973257.1  ciliary neurotrophic factor receptor subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A2R9C7G4

  3. XM_034967341.3 → XP_034823232.1  ciliary neurotrophic factor receptor subunit alpha isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  4. XM_034967339.3 → XP_034823230.1  ciliary neurotrophic factor receptor subunit alpha isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  5. XM_057303158.2 → XP_057159141.1  ciliary neurotrophic factor receptor subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A2R9C7G4

  6. XM_034967338.3 → XP_034823229.1  ciliary neurotrophic factor receptor subunit alpha isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  7. XM_034967342.3 → XP_034823233.1  ciliary neurotrophic factor receptor subunit alpha isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  8. XM_003829802.4 → XP_003829850.1  ciliary neurotrophic factor receptor subunit alpha isoform X4

    See identical proteins and their annotated locations for XP_003829850.1

    UniProtKB/TrEMBL
    A0A2R9C7G4
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  9. XM_057303157.2 → XP_057159140.1  ciliary neurotrophic factor receptor subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A2R9C7G4

  10. XM_034967337.2 → XP_034823228.1  ciliary neurotrophic factor receptor subunit alpha isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  11. XM_034967335.3 → XP_034823226.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    Conserved Domains (3) summary
    smart00408
    Location:144 → 201
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:309 → 405
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:144 → 152
    Ig; Ig strand B [structural motif]

  12. XM_034967336.3 → XP_034823227.3  ciliary neurotrophic factor receptor subunit alpha isoform X2

RNA

  1. XR_010109156.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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