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CSPG4 chondroitin sulfate proteoglycan 4 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100973434, updated on 6-Jun-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
See related
Ensembl:ENSPPAG00000029648
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 16 NC_073265.2 (64867979..64906630, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 15 NC_073264.1 (69030759..69070439, complement)

Chromosome 16 - NC_073265.2Genomic Context describing neighboring genes Neighboring gene snurportin 1 Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3 Neighboring gene sorting nexin 33 Neighboring gene uncharacterized LOC134729094 Neighboring gene ciliary microtubule associated protein 1C Neighboring gene dynamin-1-like Neighboring gene uncharacterized LOC103786168

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073265.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    64867979..64906630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034939157.3 → XP_034795048.3  chondroitin sulfate proteoglycan 4

    UniProtKB/TrEMBL
    A0A2R9A6S7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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