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RARS1 arginyl-tRNA synthetase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100970857, updated on 8-Mar-2024

Summary

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Gene symbol
RARS1
Gene description
arginyl-tRNA synthetase 1
See related
Ensembl:ENSPPAG00000043505
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
RARS
Orthologs
human mouse all
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Genomic context

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See RARS1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 4 NC_073253.2 (163649100..163682236)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 5 NC_073254.1 (161788645..161821781)

Chromosome 4 - NC_073253.2Genomic Context describing neighboring genes Neighboring gene teneurin transmembrane protein 2 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene solute carrier family 2, facilitated glucose transporter member 3-like Neighboring gene WW and C2 domain containing 1 Neighboring gene fibrillarin like 1 Neighboring gene pantothenate kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arginine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073253.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    163649100..163682236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003810913.4 → XP_003810961.1  arginine--tRNA ligase, cytoplasmic

    See identical proteins and their annotated locations for XP_003810961.1

    UniProtKB/TrEMBL
    A0A2R9CLD1
    Related
    ENSPPAP00000041813.1
    Conserved Domains (4) summary
    cd00671
    Location:193 → 457
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    smart01016
    Location:79 → 166
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal dom
    PLN02286
    Location:80 → 660
    PLN02286; arginine-tRNA ligase
    cl12020
    Location:498 → 660
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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