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POLR2B RNA polymerase II subunit B [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100968738, updated on 10-Oct-2024

Summary

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Gene symbol
POLR2B
Gene description
RNA polymerase II subunit B
See related
Ensembl:ENSPPAG00000040253
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See POLR2B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 3 NC_073252.2 (72744237..72798118, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 4 NC_073253.1 (72949670..73003185, complement)

Chromosome 3 - NC_073252.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene insulin like growth factor binding protein 7 Neighboring gene ubiquitin-conjugating enzyme E2 C-like Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA U13 Neighboring gene nitric oxide associated 1 Neighboring gene RE1 silencing transcription factor Neighboring gene serine peptidase inhibitor Kazal type 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB2
Names
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073252.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    72744237..72798118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063603806.1 → XP_063459876.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A2R9BZK6

  2. XM_055111519.1 → XP_054967494.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A2R9BZK6

  3. XM_034958757.2 → XP_034814648.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A2R9BZK6, A0A2R9BZL7
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional

  4. XM_055111518.2 → XP_054967493.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A2R9BZK6

  5. XM_063603807.1 → XP_063459877.1  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A2R9BZK6
Nucleotide Protein
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