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PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100968399, updated on 6-Jun-2024

Summary

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Gene symbol
PLOD3
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
See related
Ensembl:ENSPPAG00000038349
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PLOD3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 6 NC_073255.2 (119219216..119230857, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 7 NC_073256.1 (167483838..167495393, complement)

Chromosome 6 - NC_073255.2Genomic Context describing neighboring genes Neighboring gene putative diacylglycerol O-acyltransferase 2-like protein DGAT2L7P Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene zinc finger HIT-type containing 1 Neighboring gene claudin 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073255.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    119219216..119230857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003807195.5 → XP_003807243.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X1

    UniProtKB/TrEMBL
    A0A2R9BNE3, A0A2R9BR80
    Related
    ENSPPAP00000030909.1
    Conserved Domains (1) summary
    smart00702
    Location:573 → 736
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_063606079.1 → XP_063462149.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BR80
Nucleotide Protein
Heading Accession and Version

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