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PLEC plectin [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100968141, updated on 8-Mar-2024

Summary

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Gene symbol
PLEC
Gene description
plectin
See related
Ensembl:ENSPPAG00000042112
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PLEC in Genome Data Viewer
Location:
chromosome: 7
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 7 NC_073256.2 (161404304..161465828, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 8 NC_073257.1 (136934031..136995506, complement)

Chromosome 7 - NC_073256.2Genomic Context describing neighboring genes Neighboring gene nuclear receptor binding protein 2 Neighboring gene epiplakin 1 Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene uncharacterized LOC129398482 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1 Neighboring gene spermatogenesis and centriole associated 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073256.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    161404304..161465828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063606980.1 → XP_063463050.1  plectin isoform X15

  2. XM_055116057.2 → XP_054972032.2  plectin isoform X33

  3. XM_034966868.3 → XP_034822759.3  plectin isoform X14

  4. XM_034966867.3 → XP_034822758.3  plectin isoform X13

  5. XM_034966865.3 → XP_034822756.3  plectin isoform X12

  6. XM_055116056.2 → XP_054972031.2  plectin isoform X12

  7. XM_034966866.3 → XP_034822757.3  plectin isoform X12

  8. XM_063606983.1 → XP_063463053.1  plectin isoform X30

  9. XM_034966881.3 → XP_034822772.3  plectin isoform X28

  10. XM_034966876.3 → XP_034822767.3  plectin isoform X22

  11. XM_034966874.3 → XP_034822765.3  plectin isoform X20

  12. XM_063606985.1 → XP_063463055.1  plectin isoform X32

  13. XM_063606984.1 → XP_063463054.1  plectin isoform X31

  14. XM_034966883.3 → XP_034822774.3  plectin isoform X29

  15. XM_034966879.3 → XP_034822770.3  plectin isoform X27

  16. XM_063606979.1 → XP_063463049.1  plectin isoform X11

  17. XM_034966864.3 → XP_034822755.3  plectin isoform X10

  18. XM_055116055.2 → XP_054972030.2  plectin isoform X8

  19. XM_034966863.3 → XP_034822754.3  plectin isoform X9

  20. XM_034966862.3 → XP_034822753.3  plectin isoform X7

  21. XM_034966878.3 → XP_034822769.3  plectin isoform X24

  22. XM_063606982.1 → XP_063463052.1  plectin isoform X26

  23. XM_034966873.3 → XP_034822764.3  plectin isoform X19

  24. XM_034966875.3 → XP_034822766.3  plectin isoform X21

  25. XM_034966870.3 → XP_034822761.3  plectin isoform X16

  26. XM_034966858.3 → XP_034822749.3  plectin isoform X5

  27. XM_063606978.1 → XP_063463048.1  plectin isoform X6

  28. XM_034966856.3 → XP_034822747.3  plectin isoform X3

  29. XM_034966857.3 → XP_034822748.3  plectin isoform X4

  30. XM_034966855.3 → XP_034822746.3  plectin isoform X2

  31. XM_034966854.3 → XP_034822745.3  plectin isoform X1

  32. XM_034966877.3 → XP_034822768.3  plectin isoform X23

  33. XM_063606981.1 → XP_063463051.1  plectin isoform X25

  34. XM_034966872.3 → XP_034822763.3  plectin isoform X18

  35. XM_034966869.3 → XP_034822760.3  plectin isoform X17

Nucleotide Protein
Heading Accession and Version

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