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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100966932, updated on 8-Mar-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
See related
Ensembl:ENSOGAG00000015590
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852551.1 (4037788..4051579)

NW_003852551.1Genomic Context describing neighboring genes Neighboring gene thymocyte selection associated family member 2 Neighboring gene replication protein A2 Neighboring gene XK related 8 Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene complement component 1 Q subcomponent-binding protein, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852551 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852551.1 Reference OtoGar3

    Range
    4037788..4051579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012811398.1 → XP_012666852.1  acid sphingomyelinase-like phosphodiesterase 3b

    UniProtKB/TrEMBL
    H0XDL1
    Related
    ENSOGAP00000013961.2, ENSOGAT00000015591.2
    Conserved Domains (2) summary
    cd00842
    Location:9 → 308
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:68 → 266
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

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