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PCCA propionyl-CoA carboxylase subunit alpha [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100962256, updated on 8-Mar-2024

Summary

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Gene symbol
PCCA
Gene description
propionyl-CoA carboxylase subunit alpha
See related
Ensembl:ENSOGAG00000017088
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See PCCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852429.1 (9303821..9676872)

NW_003852429.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein ZIC 5 Neighboring gene Zic family member 2 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene 39S ribosomal protein L2, mitochondrial pseudogene Neighboring gene gamma-glutamylamine cyclotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852429 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables propionyl-CoA carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
propionyl-CoA carboxylase alpha chain, mitochondrial
Names
propionyl-CoA carboxylase alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852429.1 Reference OtoGar3

    Range
    9303821..9676872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003789599.2 → XP_003789647.1  propionyl-CoA carboxylase alpha chain, mitochondrial isoform X1

    UniProtKB/TrEMBL
    H0XGT6
    Related
    ENSOGAP00000015303.2, ENSOGAT00000017093.2
    Conserved Domains (5) summary
    cd06850
    Location:662 → 727
    biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
    smart00878
    Location:397 → 504
    Biotin_carb_C; Biotin carboxylase C-terminal domain
    COG4770
    Location:63 → 728
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]
    pfam00289
    Location:63 → 171
    CPSase_L_chain; Carbamoyl-phosphate synthase L chain, N-terminal domain
    pfam02786
    Location:176 → 383
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  2. XM_023513087.1 → XP_023368855.1  propionyl-CoA carboxylase alpha chain, mitochondrial isoform X2

    Conserved Domains (1) summary
    COG4770
    Location:1 → 644
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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