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HS2ST1 heparan sulfate 2-O-sulfotransferase 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100959500, updated on 8-Mar-2024

Summary

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Gene symbol
HS2ST1
Gene description
heparan sulfate 2-O-sulfotransferase 1
See related
Ensembl:ENSOGAG00000026296
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See HS2ST1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852405.1 (21292263..21437407, complement)

NW_003852405.1Genomic Context describing neighboring genes Neighboring gene superoxide dismutase [Cu-Zn]-like Neighboring gene LIM domain only 4 Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA41 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene selenoprotein F

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852405 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852405.1 Reference OtoGar3

    Range
    21292263..21437407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003784177.3 → XP_003784225.1  heparan sulfate 2-O-sulfotransferase 1

    UniProtKB/TrEMBL
    H0XQ48
    Related
    ENSOGAP00000018239.1, ENSOGAT00000032957.1
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 326
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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