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CANX calnexin [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100954656, updated on 8-Mar-2024

Summary

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Gene symbol
CANX
Gene description
calnexin
See related
Ensembl:ENSOGAG00000015727
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See CANX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852541.1 (3443635..3483085)

NW_003852541.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L15 pseudogene Neighboring gene chibby family member 3 Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene leukotriene C4 synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852541 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calnexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852541.1 Reference OtoGar3

    Range
    3443635..3483085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003799153.2 → XP_003799201.1  calnexin

    See identical proteins and their annotated locations for XP_003799201.1

    UniProtKB/TrEMBL
    H0XDX0
    Related
    ENSOGAP00000014092.2, ENSOGAT00000015733.2
    Conserved Domains (1) summary
    pfam00262
    Location:71 → 440
    Calreticulin; Calreticulin family

  2. XM_023518767.1 → XP_023374535.1  calnexin

    UniProtKB/TrEMBL
    H0XDX0
    Conserved Domains (1) summary
    pfam00262
    Location:71 → 440
    Calreticulin; Calreticulin family

  3. XM_023518768.1 → XP_023374536.1  calnexin

    UniProtKB/TrEMBL
    H0XDX0
    Conserved Domains (1) summary
    pfam00262
    Location:71 → 440
    Calreticulin; Calreticulin family
Nucleotide Protein
Heading Accession and Version

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