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COLEC11 collectin subfamily member 11 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100952974, updated on 8-Mar-2024

Summary

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Gene symbol
COLEC11
Gene description
collectin subfamily member 11
See related
Ensembl:ENSOGAG00000025711
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See COLEC11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852534.1 (2660063..2701224)

NW_003852534.1Genomic Context describing neighboring genes Neighboring gene ribonuclease H1 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene ribosomal protein S7 Neighboring gene allantoicase Neighboring gene doublecortin domain containing 2C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852534 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852534.1 Reference OtoGar3

    Range
    2660063..2701224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003798561.3 → XP_003798609.1  collectin-11

    See identical proteins and their annotated locations for XP_003798609.1

    UniProtKB/TrEMBL
    H0XZJ8
    Conserved Domains (2) summary
    cd03591
    Location:152 → 267
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:42 → 99
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_023518422.1 → XP_023374190.1  collectin-11

    UniProtKB/TrEMBL
    H0XZJ8
    Related
    ENSOGAP00000021541.1, ENSOGAT00000033614.1
    Conserved Domains (2) summary
    cd03591
    Location:152 → 267
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:42 → 99
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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