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ZNF79 zinc finger protein 79 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100951420, updated on 8-Mar-2024

Summary

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Gene symbol
ZNF79
Gene description
zinc finger protein 79
See related
Ensembl:ENSOGAG00000000595
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human all
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Genomic context

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See ZNF79 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852409.1 (30136403..30167596)

NW_003852409.1Genomic Context describing neighboring genes Neighboring gene GTPase activating Rap/RanGAP domain like 3 Neighboring gene solute carrier family 2 member 8 Neighboring gene small nucleolar RNA SNORA65 Neighboring gene ribosomal protein L12 Neighboring gene leucine rich repeat and sterile alpha motif containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852409 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 79

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852409.1 Reference OtoGar3

    Range
    30136403..30167596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012802385.2 → XP_012657839.1  zinc finger protein 79 isoform X6

    Related
    ENSOGAP00000000534.2, ENSOGAT00000000597.2
    Conserved Domains (4) summary
    COG5048
    Location:192 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:181 → 201
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:305 → 330
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:34 → 63
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_012802383.2 → XP_012657837.1  zinc finger protein 79 isoform X1

    Conserved Domains (6) summary
    COG0457
    Location:242 → 499
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:365 → 393
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:127 → 160
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:127 → 192
    TPR_11; TPR repeat
    pfam13424
    Location:191 → 261
    TPR_12; Tetratricopeptide repeat
    pfam13844
    Location:594 → 1062
    Glyco_transf_41; Glycosyl transferase family 41

  3. XM_023510484.1 → XP_023366252.1  zinc finger protein 79 isoform X2

    Conserved Domains (3) summary
    sd00006
    Location:364 → 392
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:593 → 1060
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:59 → 502
    TPR_11; TPR repeat

  4. XM_012802384.2 → XP_012657838.1  zinc finger protein 79 isoform X3

    Conserved Domains (6) summary
    COG0457
    Location:218 → 475
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:341 → 369
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:103 → 136
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:103 → 168
    TPR_11; TPR repeat
    pfam13424
    Location:167 → 237
    TPR_12; Tetratricopeptide repeat
    pfam13844
    Location:570 → 1038
    Glyco_transf_41; Glycosyl transferase family 41

  5. XM_023510486.1 → XP_023366254.1  zinc finger protein 79 isoform X5

    Conserved Domains (3) summary
    COG5048
    Location:73 → 304
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:62 → 82
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:326 → 351
    zf-H2C2_2; Zinc-finger double domain

  6. XM_023510485.1 → XP_023366253.1  zinc finger protein 79 isoform X4

    Conserved Domains (3) summary
    COG5048
    Location:121 → 352
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:110 → 130
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:374 → 399
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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