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SDC3 syndecan 3 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100950987, updated on 8-Mar-2024

Summary

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Gene symbol
SDC3
Gene description
syndecan 3
See related
Ensembl:ENSOGAG00000031276
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See SDC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852579.1 (1080408..1088981)

NW_003852579.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 1 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene pumilio homolog 1-like Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene pantetheinase-like Neighboring gene lysosomal protein transmembrane 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852579 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852579.1 Reference OtoGar3

    Range
    1080408..1088981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012812004.2 → XP_012667458.2  syndecan-3

    UniProtKB/TrEMBL
    H0XNG2
    Related
    ENSOGAP00000017653.1, ENSOGAT00000025842.1
    Conserved Domains (2) summary
    pfam01034
    Location:292 → 354
    Syndecan; Syndecan domain
    cl26464
    Location:28 → 272
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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