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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100948206, updated on 8-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSOGAG00000011400
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852452.1 (8692747..8953544, complement)

NW_003852452.1Genomic Context describing neighboring genes Neighboring gene ERGIC and golgi 2 Neighboring gene ovochymase 1 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 1-like Neighboring gene eukaryotic translation initiation factor 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852452 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852452.1 Reference OtoGar3

    Range
    8692747..8953544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023514731.1 → XP_023370499.1  transmembrane and TPR repeat-containing protein 1

    UniProtKB/TrEMBL
    H0X4R1
    Related
    ENSOGAP00000010211.2, ENSOGAT00000011405.2
    Conserved Domains (3) summary
    sd00006
    Location:562 → 590
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:272 → 345
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:449 → 855
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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