U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RBBP6 RB binding protein 6, ubiquitin ligase [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100944427, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
RBBP6
Gene description
RB binding protein 6, ubiquitin ligase
See related
Ensembl:ENSOGAG00000026986
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RBBP6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852491.1 (2560963..2599392)

NW_003852491.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 3 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene trinucleotide repeat containing adaptor 6A Neighboring gene U1 spliceosomal RNA Neighboring gene U6atac minor spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003852491 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase RBBP6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852491.1 Reference OtoGar3

    Range
    2560963..2599392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003795738.2 → XP_003795786.1  E3 ubiquitin-protein ligase RBBP6 isoform X1

    UniProtKB/TrEMBL
    H0XXM4
    Related
    ENSOGAP00000020867.1, ENSOGAT00000026369.1
    Conserved Domains (2) summary
    cl26511
    Location:943 → 1611
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 322
    DWNN; DWNN domain

  2. XM_003795737.3 → XP_003795785.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

    Conserved Domains (4) summary
    smart00184
    Location:259 → 299
    RING; Ring finger
    COG5222
    Location:2 → 322
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam08783
    Location:4 → 75
    DWNN; DWNN domain
    pfam13696
    Location:156 → 176
    zf-CCHC_2; Zinc knuckle

  3. XM_023516697.1 → XP_023372465.1  E3 ubiquitin-protein ligase RBBP6 isoform X1

    UniProtKB/TrEMBL
    H0XXM4
    Conserved Domains (2) summary
    cl26511
    Location:943 → 1611
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 322
    DWNN; DWNN domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.