U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NYX nyctalopin [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100943707, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
NYX
Gene description
nyctalopin
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NYX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852553.1 (4188662..4213699)

NW_003852553.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene G2/mitotic-specific cyclin-B1-like Neighboring gene lysosomal-associated transmembrane protein 4B-like Neighboring gene mortality factor 4-like protein 1 pseudogene Neighboring gene cytochrome c oxidase assembly factor 6 homolog pseudogene Neighboring gene tubulin polymerization-promoting protein family member 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003852553 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852553.1 Reference OtoGar3

    Range
    4188662..4213699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012811454.1 → XP_012666908.1  nyctalopin

    Conserved Domains (5) summary
    smart00082
    Location:331 → 374
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:68 → 303
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:323 → 335
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:63 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:201 → 261
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.