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LCAT lecithin-cholesterol acyltransferase [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100941922, updated on 8-Mar-2024

Summary

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Gene symbol
LCAT
Gene description
lecithin-cholesterol acyltransferase
See related
Ensembl:ENSOGAG00000031091
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See LCAT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852546.1 (1046602..1050443)

NW_003852546.1Genomic Context describing neighboring genes Neighboring gene dipeptidase 2 Neighboring gene dipeptidase 3 Neighboring gene solute carrier family 12 member 4 Neighboring gene proteasome 20S subunit beta 10 Neighboring gene chymotrypsin like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852546 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylcholine-sterol O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine-sterol acyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852546.1 Reference OtoGar3

    Range
    1046602..1050443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003799375.3 → XP_003799423.1  phosphatidylcholine-sterol acyltransferase isoform X1

    UniProtKB/TrEMBL
    H0XY14
    Related
    ENSOGAP00000021007.1, ENSOGAT00000026793.1
    Conserved Domains (1) summary
    pfam02450
    Location:86 → 411
    LCAT; Lecithin:cholesterol acyltransferase

  2. XM_023518901.1 → XP_023374669.1  phosphatidylcholine-sterol acyltransferase isoform X2

    Conserved Domains (1) summary
    pfam02450
    Location:11 → 336
    LCAT; Lecithin:cholesterol acyltransferase
Nucleotide Protein
Heading Accession and Version

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