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CLEC5A C-type lectin domain containing 5A [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100938001, updated on 26-Mar-2024

Summary

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Gene symbol
CLEC5A
Gene description
C-type lectin domain containing 5A
Locus tag
CR201_G0022824
See related
Ensembl:ENSPPYG00000018072
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See CLEC5A in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 6 NC_071991.2 (139310197..139329800, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 7 NC_071992.1 (133131983..133151587, complement)

Chromosome 6 - NC_071991.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129060497 Neighboring gene olfactory receptor 9A4-like Neighboring gene maltase-glucoamylase Neighboring gene taste 2 receptor member 38 Neighboring gene maltase-glucoamylase 2 (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables virus receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 5 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071991.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    139310197..139329800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054559919.2 → XP_054415894.1  C-type lectin domain family 5 member A isoform X2

  2. XM_024250386.3 → XP_024106154.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    A0A2J8V336, H2PNR2
    Related
    ENSPPYP00000020278.2
    Conserved Domains (1) summary
    cd03593
    Location:71 → 185
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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