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XYLB xylulokinase [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100934943, updated on 11-Apr-2024

Summary

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Gene symbol
XYLB
Gene description
xylulokinase
See related
Ensembl:ENSSHAG00000010755
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See XYLB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (63621203..63841736)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823612.1 (741547..959027)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116422003 Neighboring gene WNK lysine deficient protein kinase 2 Neighboring gene ninjurin 1 Neighboring gene activin A receptor type 2B Neighboring gene biliverdin reductase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylulokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylulose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylulose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    63621203..63841736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031957004.1 → XP_031812864.1  xylulose kinase isoform X3

    Conserved Domains (1) summary
    cd07776
    Location:6 → 426
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  2. XM_012543706.3 → XP_012399160.1  xylulose kinase isoform X1

    UniProtKB/TrEMBL
    G3WAV7
    Related
    ENSSHAP00000012562.1, ENSSHAT00000012666.2
    Conserved Domains (2) summary
    PLN02669
    Location:3 → 528
    PLN02669; xylulokinase
    cd07776
    Location:6 → 475
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  3. XM_031956996.1 → XP_031812856.1  xylulose kinase isoform X2

    Conserved Domains (1) summary
    cd07776
    Location:1 → 413
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases
Nucleotide Protein
Heading Accession and Version

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