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GTPBP6 GTP binding protein 6 (putative) [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100934347, updated on 8-Mar-2024

Summary

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Gene symbol
GTPBP6
Gene description
GTP binding protein 6 (putative)
See related
Ensembl:ENSSHAG00000015570
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See GTPBP6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (219362336..219385411)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831835.1 (1842571..1865975)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene SHOX homeobox Neighboring gene protein phosphatase 2 regulatory subunit B''beta Neighboring gene cohesin subunit SA-2 Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 1 Neighboring gene regucalcin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative GTP-binding protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    219362336..219385411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003765615.4 → XP_003765663.1  putative GTP-binding protein 6

    UniProtKB/TrEMBL
    A0A7N4NRB3, A0A7N4PKX6
    Related
    ENSSHAP00000040057.1, ENSSHAT00000046892.1
    Conserved Domains (4) summary
    cd01878
    Location:256 → 457
    HflX; HflX GTPase family
    TIGR03156
    Location:98 → 457
    GTP_HflX; GTP-binding protein HflX
    pfam13167
    Location:119 → 209
    GTP-bdg_N; GTP-binding GTPase N-terminal
    pfam16360
    Location:213 → 285
    GTP-bdg_M; GTP-binding GTPase Middle Region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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