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CUL4B cullin 4B [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100933866, updated on 8-Mar-2024

Summary

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Gene symbol
CUL4B
Gene description
cullin 4B
See related
Ensembl:ENSSHAG00000011426
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See CUL4B in Genome Data Viewer
Location:
chromosome: X
Exon count:
25
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) X NC_045432.1 (26565878..26628381, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) X Unlocalized Scaffold NW_003849600.1 (849604..905474, complement)

Chromosome X - NC_045432.1Genomic Context describing neighboring genes Neighboring gene ATPase Na+/K+ transporting family member beta 4 Neighboring gene lysosomal associated membrane protein 2 Neighboring gene C1GALT1 specific chaperone 1 Neighboring gene uncharacterized LOC116420220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4B-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cullin-4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045432.1 Reference mSarHar1.11 Primary Assembly

    Range
    26565878..26628381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031944900.1 → XP_031800760.1  cullin-4B isoform X1

    UniProtKB/TrEMBL
    G3WD56
    Conserved Domains (2) summary
    smart00884
    Location:825 → 890
    Cullin_Nedd8; Cullin protein neddylation domain
    pfam00888
    Location:200 → 797
    Cullin; Cullin family

  2. XM_012553232.2 → XP_012408686.1  cullin-4B isoform X1

    UniProtKB/TrEMBL
    G3WD56
    Related
    ENSSHAP00000013361.2, ENSSHAT00000013472.2
    Conserved Domains (2) summary
    smart00884
    Location:825 → 890
    Cullin_Nedd8; Cullin protein neddylation domain
    pfam00888
    Location:200 → 797
    Cullin; Cullin family

  3. XM_003774762.3 → XP_003774810.1  cullin-4B isoform X2

    UniProtKB/TrEMBL
    G3WD57
    Related
    ENSSHAP00000013362.2, ENSSHAT00000013473.2
    Conserved Domains (4) summary
    smart00182
    Location:585 → 725
    CULLIN; Cullin
    smart00884
    Location:831 → 896
    Cullin_Nedd8; Cullin protein neddylation domain
    pfam00888
    Location:207 → 802
    Cullin; Cullin family
    cl17037
    Location:185 → 274
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein
Heading Accession and Version

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