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AARS1 alanyl-tRNA synthetase 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100933273, updated on 8-Mar-2024

Summary

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Gene symbol
AARS1
Gene description
alanyl-tRNA synthetase 1
See related
Ensembl:ENSSHAG00000007347
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Also known as
AARS
Orthologs
human mouse all
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Genomic context

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See AARS1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (39050211..39069909)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816786.1 (308521..329066, complement)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DDX19B Neighboring gene ATP-dependent RNA helicase DDX19B Neighboring gene exosome component 6 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    39050211..39069909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031949982.1 → XP_031805842.1  alanine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    G3VZ78
    Related
    ENSSHAP00000008483.1, ENSSHAT00000008552.2
    Conserved Domains (1) summary
    PLN02900
    Location:6 → 959
    PLN02900; alanyl-tRNA synthetase

  2. XM_031949983.1 → XP_031805843.1  alanine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    G3VZ78
    Conserved Domains (1) summary
    PLN02900
    Location:6 → 959
    PLN02900; alanyl-tRNA synthetase
Nucleotide Protein
Heading Accession and Version

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