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DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100931475, updated on 8-Mar-2024

Summary

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Gene symbol
DYNC1I2
Gene description
dynein cytoplasmic 1 intermediate chain 2
See related
Ensembl:ENSSHAG00000015273
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See DYNC1I2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (401682225..401743743, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831643.1 (1730554..1792564)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase 1 Neighboring gene solute carrier family 25 member 12 Neighboring gene signal peptidase complex subunit 3 pseudogene Neighboring gene cytochrome b reductase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transport along microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic dynein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic dynein 1 intermediate chain 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    401682225..401743743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031960465.1 → XP_031816325.1  cytoplasmic dynein 1 intermediate chain 2 isoform X1

    UniProtKB/TrEMBL
    G3WRD4
    Related
    ENSSHAP00000017989.2, ENSSHAT00000018138.2
    Conserved Domains (3) summary
    COG2319
    Location:321 → 591
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:331 → 369
    7WD40; WD40 repeat [structural motif]
    pfam11540
    Location:129 → 157
    Dynein_IC2; Cytoplasmic dynein 1 intermediate chain 2

  2. XM_012544816.2 → XP_012400270.1  cytoplasmic dynein 1 intermediate chain 2 isoform X2

    UniProtKB/TrEMBL
    G3WRD3
    Related
    ENSSHAP00000017988.2, ENSSHAT00000018137.2
    Conserved Domains (4) summary
    COG2319
    Location:301 → 571
    WD40; WD40 repeat [General function prediction only]
    pfam11540
    Location:109 → 137
    Dynein_IC2; Cytoplasmic dynein 1 intermediate chain 2
    sd00039
    Location:311 → 349
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:248 → 570
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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